class

Wgsim::Sequencing::ReadPairSimulator

Inherits Wgsim::Dna < Reference < Object

Constants

MAX_INSERT_SIZE_RESAMPLINGS = 10000

PROGRESS_REPORT_COUNT = 10

Constructors

new(average_depth : Float64, mean_insert_size : Int32, insert_size_std_dev : Int32, read1_length : Int32, read2_length : Int32, error_rate : Float64, max_ambiguous_ratio : Float64, seed : UInt64 | Nil = nil)

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Instance methods

average_depth

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average_depth=(average_depth : Float64)

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build_read_pair_sequences(contig_sequence, fragment_start, insert_size, read1_starts_at_fragment_left : Bool) : Tuple(Slice(UInt8), Slice(UInt8))

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error_rate

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error_rate=(error_rate : Float64)

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insert_size_std_dev

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insert_size_std_dev=(insert_size_std_dev : Int32)

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max_ambiguous_ratio

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max_ambiguous_ratio=(max_ambiguous_ratio : Float64)

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mean_insert_size

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mean_insert_size=(mean_insert_size : Int32)

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next_bool(*args, **options)

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next_bool(*args, **options, &)

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rand(*args, **options)

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rand(*args, **options, &)

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randn(*args, **options)

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randn(*args, **options, &)

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read1_length

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read1_length=(read1_length : Int32)

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read2_length

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read2_length=(read2_length : Int32)

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sample_fragment_start(contig_length : Int, insert_size : Int) : Int32

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sample_insert_size(contig_length : Int32) : Int32

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simulate_read_pairs(sequence_name, sequence, &)

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