struct

Wgsim::Sequencing::FastqRecord

Inherits Struct < Value < Object

One FASTQ read emitted by the paired-end simulator.

The identifier includes fragment coordinates so a student can trace a read back to the simulated DNA fragment it came from.

Constructors

new(read_name : String, pair_index : Int32, fragment_start : Int32, insert_size : Int32, mate_index : Int32, read_sequence : Slice(UInt8), quality_sequence : Slice(UInt8))

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Instance methods

fragment_start

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fragment_start=(fragment_start : Int32)

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identifier

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insert_size

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insert_size=(insert_size : Int32)

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mate_index

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mate_index=(mate_index : Int32)

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pair_index

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pair_index=(pair_index : Int32)

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quality_sequence

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quality_sequence=(quality_sequence : Slice(UInt8))

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read_name

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read_name=(read_name : String)

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read_sequence

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read_sequence=(read_sequence : Slice(UInt8))

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to_s(io : IO)

Same as #inspect(io).

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to_s

Returns a nicely readable and concise string representation of this object, typically intended for users.

This method should usually not be overridden. It delegates to #to_s(IO) which can be overridden for custom implementations.

Also see #inspect.

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