class

Wgsim::Mutate::Option

Inherits Reference < Object

Constants

DEFAULT_DELETION_EXTENSION_PROBABILITY = 0.3
DEFAULT_DELETION_RATE = 0.0001
DEFAULT_INSERTION_EXTENSION_PROBABILITY = 0.3
DEFAULT_INSERTION_RATE = 0.0001
DEFAULT_PLOIDY = 2_u8
DEFAULT_SUBSTITUTION_RATE = 0.001
MAX_PROBABILITY = 1.0
MIN_PROBABILITY = 0.0

Instance methods

deletion_extension_probability
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deletion_extension_probability=(deletion_extension_probability : Float64)
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deletion_rate
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deletion_rate=(deletion_rate : Float64)
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insertion_extension_probability
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insertion_extension_probability=(insertion_extension_probability : Float64)
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insertion_rate
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insertion_rate=(insertion_rate : Float64)
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mutated_fasta
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mutated_fasta=(mutated_fasta : Path | Nil)
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mutation_event_log
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mutation_event_log=(mutation_event_log : Path | Nil)
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ploidy
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ploidy=(ploidy : UInt8)
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reference
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reference=(reference : Path | Nil)
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seed
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seed=(seed : UInt64 | Nil)
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substitution_rate
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substitution_rate=(substitution_rate : Float64)
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summary
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validate!
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