class

Wgsim::Sequencing::Option

Inherits Reference < Object

Constants

DEFAULT_AVERAGE_DEPTH = 10.0

DEFAULT_ERROR_RATE = 0.01

DEFAULT_INSERT_SIZE_STD_DEV = 50

DEFAULT_MAX_AMBIGUOUS_RATIO = 0.05

DEFAULT_MEAN_INSERT_SIZE = 500

DEFAULT_READ1_LENGTH = 100

DEFAULT_READ2_LENGTH = 100

MAX_PROBABILITY = 1.0

MIN_PROBABILITY = 0.0

Instance methods

average_depth

average_depth=(average_depth : Float64)

error_rate

error_rate=(error_rate : Float64)

insert_size_std_dev

insert_size_std_dev=(insert_size_std_dev : Int32)

max_ambiguous_ratio

max_ambiguous_ratio=(max_ambiguous_ratio : Float64)

mean_insert_size

mean_insert_size=(mean_insert_size : Int32)

read1_fastq

read1_fastq=(read1_fastq : Path | Nil)

read1_length

read1_length=(read1_length : Int32)

read2_fastq

read2_fastq=(read2_fastq : Path | Nil)

read2_length

read2_length=(read2_length : Int32)

reference

reference=(reference : Path | Nil)

seed

seed=(seed : UInt64 | Nil)

summary

validate!