class

Minimap2::MmReg1

Inherits Reference < Object

One alignment hit (mirrors mm_reg1_t)

Constructors

Instance methods

a_off
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a_off=(a_off : Int32)
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blen
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blen=(blen : Int32)
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cnt=(cnt : Int32)
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div=(div : Float32)
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hash

Generates an UInt64 hash value for this object.

This method must have the property that a == b implies a.hash == b.hash.

The hash value is used along with == by the Hash class to determine if two objects reference the same hash key.

Subclasses must not override this method. Instead, they must define hash(hasher), though usually the macro def_hash can be used to generate this method.

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hash=(hash : UInt32)
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id=(id : Int32)
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inv=(inv : Bool)
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inv?
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is_alt=(is_alt : Bool)
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is_alt?
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is_spliced=(is_spliced : Bool)
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is_spliced?
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mapq

Packed bitfields (see accessor methods below)

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mapq=(mapq : UInt32)

Packed bitfields (see accessor methods below)

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mlen
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mlen=(mlen : Int32)
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n_sub
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n_sub=(n_sub : Int32)
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p=(p : MmExtra | Nil)
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parent
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parent=(parent : Int32)
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pe_thru=(pe_thru : Bool)
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pe_thru?
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proper_frag=(proper_frag : Bool)
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proper_frag?
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qe=(qe : Int32)
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qs=(qs : Int32)
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re=(re : Int32)
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rev=(rev : Bool)
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rev?
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rid=(rid : Int32)
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rs=(rs : Int32)
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sam_pri=(sam_pri : Bool)
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sam_pri?
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score
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score0
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score0=(score0 : Int32)
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score=(score : Int32)
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seg_id
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seg_id=(seg_id : UInt32)
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seg_split=(seg_split : Bool)
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seg_split?
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split
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split=(split : UInt32)
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split_inv=(split_inv : Bool)
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split_inv?
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strand
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strand_retained=(strand_retained : Bool)
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strand_retained?
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subsc
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subsc=(subsc : Int32)
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