class

UnClone::PhyCloneRunConfig

Inherits Reference < Object

Constructors

Instance methods

assign_loss_prob=(assign_loss_prob : Bool)
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assign_loss_prob?
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burn_in_iters
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burn_in_iters=(burn_in_iters : Int32)
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cluster_file
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cluster_file=(cluster_file : String | Nil)
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compress=(compress : Bool)
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compress?
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concentration_update=(concentration_update : Bool)
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concentration_update?
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concentration_value
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concentration_value=(concentration_value : Float64)
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density
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density=(density : Density)
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high_loss_prob
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high_loss_prob=(high_loss_prob : Float64)
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in_file
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in_file=(in_file : String)
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loss_prob
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loss_prob=(loss_prob : Float64)
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max_time
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max_time=(max_time : Float64)
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num_chains
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num_chains=(num_chains : Int32)
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num_grid_points
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num_grid_points=(num_grid_points : Int32)
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num_iters
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num_iters=(num_iters : Int32)
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num_particles
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num_particles=(num_particles : Int32)
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num_samples_data_point
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num_samples_data_point=(num_samples_data_point : Int32)
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num_samples_prune_regraft
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num_samples_prune_regraft=(num_samples_prune_regraft : Int32)
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out_file
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out_file=(out_file : String)
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outlier_prob
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outlier_prob=(outlier_prob : Float64)
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precision
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precision=(precision : Float64)
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print_freq=(print_freq : Int32)
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proposal
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proposal=(proposal : PhyCloneProposal)
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resample_threshold
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resample_threshold=(resample_threshold : Float64)
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seed
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seed=(seed : UInt64 | Nil)
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subtree_update_prob
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subtree_update_prob=(subtree_update_prob : Float64)
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thin
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thin=(thin : Int32)
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user_provided_loss_prob=(user_provided_loss_prob : Bool)
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user_provided_loss_prob?
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