class

HTS::Faidx

Inherits Reference < Object

Constructors

new(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true)
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Class methods

build_index(file_name : Path | String, fai_path : String | Nil = nil, gzi_path : String | Nil = nil)
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open(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true)
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open(file_name : Path | String, *, format : Symbol = :auto, auto_build : Bool = true, &)
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Instance methods

build_index(fai_path : String | Nil = nil, gzi_path : String | Nil = nil)
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close
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closed?
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fetch_qual(name : String | Symbol, start : Int, stop : Int)
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fetch_qual(name : String | Symbol)
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fetch_seq(name : String | Symbol, start : Int, stop : Int)
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fetch_seq(name : String | Symbol)
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file_name
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finalize
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format
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has_seq?(name : String | Symbol)
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length
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names
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seq_len(name : String | Symbol)
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size
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to_unsafe
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Nested types